VirFinder

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Error: 'rBind' is defunct,Since R version 3.2.0, base's rbind() should work fine with S4 objects

1

hello， I encountered the following questionsproblem in Windows 10, version R 3.6.3.Then use virfinder to switch to MacOS user R version 4.2.0 and the problem is not resolved. **> VF.trainModUser

zhongshengbin269

qinjunjun

Hello, In the root of your repository you distribute https://github.com/jessieren/VirFinder/blob/master/licence.md that declares the software to only be used for non-commercial purposes. The R package itself states GPL-2 or later in...

smoe

Use output of Prodigal for VirFinder

2

Dear developers, I have a brief question after running megahit I run prodigal for all my metagenomic samples (using the -meta flag) for using them in other analyses. Should I...

drelo

Error in smooth.spline(lambda, pi0, df = smooth.df) :

2

Hi，Jessie Thanks for your VirFinder job! when I test with my single sequence follow your github instruction，it return ```r Error in smooth.spline(lambda, pi0, df = smooth.df) : missing or infinite...

neptuneyt

Multi-threaded operation

2

Due to the big data about the metagenomic analysis, I wonder weather VirFinder can use Multi-threaded to predict Virus sequences.

limeng849

Hi there, I have used this tool locally works great! But for larger/more samples i tried to install it onto a server (where conda is not permitted) as follows: _$module...

soilmicrobiome

I've spent few hours myself, try to figure out why installation from release archive won't succeed. Maybe we can spare the time of people this way. Or did I not...

stefanches7

VirFinder application in transcriptomes

7

Hello, Jessieren! I`m trying to run VirFinder 1.1 in Ubuntu to discover viruses in transcriptomes. Methodology of the package is able to detect this? The following error occurs when I...

denisbruno1

Hi, I am training my own model with a large sequence dataset (

a7032018