KrakenTools Is it possible to filter the kraken.report or bracken.report?

Is it possible to filter the kraken.report or bracken.report?

Open B-1991-ing opened this issue 1 year ago • 1 comments

Hi Jennifer,

So, is it possible for you to write a script to filter the taxonomy ids I need to generate a new kraken or bracken.report?

I only want the taxonomic ids from Bacteria and Archaea. kraken.report Screenshot 2023-05-04 at 10 32 41

braken.report Screenshot 2023-05-04 at 10 34 47

Thank you very much.

Best,

Bing

May 04 '23 07:05 B-1991-ing

Any progress here please how to filter to include only bacteria ?

Oct 25 '23 10:10 Sabrin2020