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Handle kreports with no root line

Open schorlton opened this issue 1 year ago • 0 comments

Kraken2 outputs kraken reports without a "Root" line if all reads are unclassified. I have not tested the other Kraken versions.

This fixes an error where the tree is uninitialized because the first kreport file passed to combine_kreports.py contains only unclassified reads.

schorlton avatar Mar 21 '23 14:03 schorlton