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Taxonomy IDs not matching for species Capnocytophaga: (1227 1556)

Open JochenSchaefergmxde opened this issue 4 years ago • 2 comments

i get these Error with the Database 16S_Greengenes_k2db_bracken_out.txt which Taxonomy doesnt fit ? bracken build it !?

JochenSchaefergmxde avatar Feb 09 '22 21:02 JochenSchaefergmxde

@JochenSchaefergmxde this happens when you run Kraken with --use-names. If you exclude this parameter, Bracken will process the output files correctly.

jenniferlu717 avatar Mar 24 '22 10:03 jenniferlu717

@jenniferlu717 I get the same error, I have tried without --use-names option but I get the same error again

AndreaQ7 avatar Apr 28 '22 08:04 AndreaQ7