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Published 20 hours ago • verified publisher icon jenniferlu717

Phylogenetic diversity

Open mariemh23 opened this issue 3 years ago • 1 comments

Hello !! Is there any way to generate a phylogenetic tree from Bracken output. I aim to estimate phylogenetic diversity (exp: Faith PD)? Regards

mariemh23 avatar Feb 05 '22 12:02 mariemh23

You can use the scripts here: https://github.com/jenniferlu717/KrakenTools for diversity calculations. Otherwise, im not fully sure what phylogenetic tree you aim to generate.

jenniferlu717 avatar Mar 24 '22 11:03 jenniferlu717