Kraken2 classification errors

[laibinhuang]

I am using Kraken2 for classification, but I get some errors: would you mind helping me out. Thank you very much. The code:KRAKEN_DB="/home/lbhuang/ref/kraken/ABFPV/"  #note ABFPV is a database built using kraken2 just has three files after clean step:hash.k2d: Contains the minimizer to taxon mappingsopts.k2d: Contains information about the options used to build the databasetaxo.k2d: Contains taxonomy information used to build the databasecd /home/lbhuang/Moore/results/trimmed/ for i in *_R1_trimmed.fastq.gz do         filename=$(basename "$i") #do not add \ after this#         fname="${filename%_R1_trimmed.fastq.gz}" #do not add \ after this#         kraken2 --db ${KRAKEN_DB}  
        --confidence 0.01
        --threads 32
        --use-names
        --use-mpa-style
        --output /home/lbhuang/Moore/results/K2/k2_outputs/${fname}_output.txt
        --report /home/lbhuang/Moore/results/K2/k2_reports/${fname}_report.txt
        --paired $fname_R1_trimmed.fastq.gz  $fname_R2_trimmed.fastq.gz done

[jenniferlu717]

What errors are you getting? Also if you have a kraken2 issue, please use the kraken2 github account