Bracken "Value Error: not enough values to unpack (expected 3, got 1)

[Virome1]

Hi,

I am running bracken and using the following database: https://bridges.monash.edu/projects/Metagenomics_Index_Correction/65534

This is the error I am getting: Traceback (most recent call last): File "/opt/software/conda_env/bin/src/est_abundance.py", line 488, in <module> main() File "/opt/software/conda_env/bin/src/est_abundance.py", line 287, in main [mapped_taxid, mapped_taxid_dict] = process_kmer_distribution(line,lvl_taxids,map2lvl_taxids) File "/opt/software/conda_env/bin/src/est_abundance.py", line 99, in process_kmer_distribution [g_taxid,mkmers,tkmers] = genome_str.split(':') ValueError: not enough values to unpack (expected 3, got 1) Any help would be appreciated

[fengyuchengdu]

I've got the same issue. Anyone wanna share a solution? Many thanks.

I'm using Krakenuniq with the pre-built database downloaded from https://benlangmead.github.io/aws-indexes/k2, the 384G one EuPathDB48, to generate the report file.

[ZhangDengwei]

I've got the same issue. Anyone wanna share a solution? Many thanks.

I'm using Krakenuniq with the pre-built database downloaded from https://benlangmead.github.io/aws-indexes/k2, the 384G one EuPathDB48, to generate the report file.

Hi @fengyuchengdu , have you addressed this issue?