Jordan Eizenga
Jordan Eizenga
I think that's the explanation anyway. Literally everything disappears: the dropdown menus at the top, the actual visualization, the options menu at the bottom. Just a white Chrome window. It...
Not quite sure how to fix this from an algorithmic point of view, but it's pretty confusing as a user. Here's an example, starting from node 1434110: ![screen shot 2019-02-27...
For example, this does not look like 100 nodes: ![screen shot 2019-02-27 at 10 54 50 am](https://user-images.githubusercontent.com/7377501/53515132-23a7ca80-3a7e-11e9-9225-ff4cf1bb198b.png)
The problem seems to arise from not using `noexcept` in the constructors: https://stackoverflow.com/questions/8001823/how-to-enforce-move-semantics-when-a-vector-grows We may want to make this a requirement for the handle graph interface as well.
I haven't looked into this deeply yet, but we should figure out whether this is the fault of the tests or the implementation, or perhaps a disagreement over the generality...
I made a mistake setting the resizing factor of the hash tables in PackedGraph, which it handled too gracefully for me to notice. I want to test out the fix's...
Pertains to https://github.com/edawson/gfakluge/issues/51 Here's a PR with the inline methods I talked about. I guess we also have some commits from Erik about memmapping in our master branch. I'll let...
The gfakluge.hpp header consists mostly of methods that are neither inline nor template. That means it can't be included by multiple .cpp's, or else you will get redefinition errors at...
I had to make some tweaks to get this to compile/run on my compute server: - Used `rm -f` instead of `-rm` so that `make` doesn't report itself as having...
I ran with this command: ``` python3 main.py --reads alpha_reads.fastq.gz -o verity_map_output_alpha -t 16 -d hifi-diploid assembly.haplotype1.fasta assembly.haplotype2.fasta ``` According to the `veritymap.log` the run completed successfully: ``` 02:09:13 59.8Gb...