Jordan Eizenga

Yes, thanks! Sorry to be not-so-responsive, I've been tied up prepping a manuscript. I'm hoping to get it out the door pretty soon, at which point I'll have some more...

Hi, sorry to have been so non-responsive about this. I've looked into this a bit, and it seems like the implementation will be a bit more involved than I expected....

Hmm. I'm not sure why that would happen. Are you able to share the GFA? You can email it to me at [email protected].

I have a follow-up question. Do you know how much disk space and memory you had available when you ran into this problem?

I suspect the problem is that you ran out of temporary storage space on your disk while constructing the GCSA2 index. The final GCSA2 is typically < 20 GB, but...

Unfortunately, no, I don't think so. If you have new variants you want to add into the graph, I think the most direct solution would be to use bcftools to...

Yes, that should be fine. There's no real limit on the number of components the graph can have. If you follow the same pipeline as in that wiki you should...

Ah, yes, I know that bug. It should be fixed in v1.33.0

Also potentially relevant: ``` > g++ --version g++ (MacPorts gcc49 4.9.3_0) 4.9.3 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There...

Apparently I'm not the only one whose Mac has problems with it: https://stackoverflow.com/questions/10327939/error-no-such-instruction-while-assembling-project-on-mac-os-x