assess_specific_genes.nf fails to open ORTHOGROUPS_SINGLE_GENE.NT.treefile

[Keevai09]

Hi, I am facing the below mention issue. I have tried to go through the module assess_specific_genes.nf and unable to resolve this on my own and would request your help. I am trying this with the test data provided in github.

"ORTHOGROUPS_SINGLE_GENE.NT.treefile" is generated. but still I am getting the below error.

Define the location of the results of OrthoFinder run, i.e. the most recent output folder. Extract orthologs per gene (Outputs: {GENE}.ortho) Move blast output into a seperate directory to clean-up a bit. Extract gene families (Output: {GENE}.orthocounts) Infer gene family expansion and contraction (Outpus: {GENE}.conex) Failed to open ORTHOGROUPS_SINGLE_GENE.NT.treefile

grep: GSTU13_CAFE_results/Gamma_clade_results.txt: No such file or directory Clean-up. Output: (1/3) {GENE}.ortho (2/3) {GENE}.conex (3/3) BLASTOUT/