cannot open file 'ORTHOGROUPS_SINGLE_GENE.NT.timetree.nex': No such file or directory

[jacquelinemattos]

Hi,

I'm running compare_genomes pipeline and am having this error:

Error in file(file, "r") : cannot open the connection Calls: read.nexus -> scan -> file In addition: Warning message: In file(file, "r") : cannot open file 'ORTHOGROUPS_SINGLE_GENE.NT.timetree.nex': No such file or directory Execution halted

I tried doing some things that you have suggested on other issue posts, but nothing solved it. I changed the Panther database to the 18.0, and also related to the divergence times, I used the estimates that are available on timetree, so I think it should be fine? This error keep happening and I don't know what else could be done.

If you could please help me, it would be very much appreciated.

Cheers, Jacqueline