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semi-global `parasail_sg_dx` not reporting `beg_ref` correctly

Open nh13 opened this issue 2 years ago • 0 comments

Example query GAAT and database/target AGAATA. The returned cigar via parasail_result_get_cigar is beg_query=0, beg_ref=0. The ends are fine (from the result) end_query=3, and end_ref=4. I would expect the following alignment:

q:  GAAT
    ||||
t: AGAATA

so I think the beg_ref should be 1 not 0. I am using v2.6.

nh13 avatar Jan 26 '23 01:01 nh13