James Kent

Hi @Remi-Gau, > While having a look at this, I realize that this notebook seems obsolete, no? Yes, that notebook is obsolete, it's now more of an artifact of how...

yes, nidm is a separate concept from neurovault so having a function specifically for nidm would be useful!

Thank you for working on this @MaxKorbmacher!

I do not have a strong opinion, m2r2 has more stars, but sphinx-mdinclude appears to be more focused as a sphinx-extension which is our use-case

Thanks for working on this, looks like the blocker is now the cognitive atlas dependency: https://github.com/CognitiveAtlas/cogat-python/issues/13

yes, I am in agreement with modifying those examples and then checking in.

The permission does indeed persist with `fabric` and `scp`. It does look possible to [change the mode of the file when copying](https://docs.fabfile.org/en/1.12.1/api/core/operations.html#fabric.operations.put) so it could be overwritable later. This may...

ahh, okay, thank you for the clarification @satra.

@yarikoptic oof, sorry, I was just generating a minimal test data-set and only changing the dicom header information where I thought was necessary, I'll change the SeriesNumber and ProtocolName on...

thanks for pointing towards an existing test, for a more minimal example, try cloning the specification in the test: ```python def test_relative_refs(relative_refs, spec): spec_path = relative_refs / spec specification =...