jdhayhurst

Add background traits to study download table

1

The background trait field is already there: https://www.ebi.ac.uk/gwas/docs/file-downloads (All studies v1.0.3) but needs to be populated with the background trait value.

Ancestral group Null representation inconsistency

1

Usually when ANCESTRY.ANCESTRAL_GROUP is given as NULL, it is displayed on the REST API and search UI as 'NR', e.g. https://www.ebi.ac.uk/gwas/rest/api/studies/GCST009376 and https://www.ebi.ac.uk/gwas/studies/GCST009376. ``` ancestries: [ { type: "initial", numberOfIndividuals:...

GCST90000255 and GCST90000256 are each associated to two study entries in the database

1

For example GCST90000255 --> study id 61975933 and 61986790. There should be a one to one relationship but here we have one to two. These studies were some of the...

Studies should not simultaneously be in published and unpublished states

18

Curators can "unpublish" studies in order to edit them and then "republish" them. The housekeeping table stores values such as the date these event occurred as well as a boolean...

Summary statistics file formatter

1

- Plink2.0 has an option to output files in the [gwas-ssf standard format](https://github.com/EBISPOT/gwas-summary-statistics-standard) - Not everyone is using plink to generate their files for submission to the GWAS Catalog. -...