Julien Cohen-Adad
Julien Cohen-Adad
It would be useful to have a function segment the CSF using deep learning, as done in `sct_propseg`. Because this would entail training specific models (the number of contrasts need...
An SCT user on the forum [has requested](https://forum.spinalcordmri.org/t/2-questions-sct-fmri-moco-and-sct-extract-metric/628/3) rotational transformations when performing registration.
Most people run commands locally and expect to get the output in the local folder. Hence, there is no point in displaying full path when calling `sct.display_viewer_syntax()`. e.g. instead of...
file info_label.txt could have the `# Combined labels` at the end (after `# Clusters used for the first step...`) so that users can easily append at the end of the...
Regularization across time is already implemented [here](https://github.com/neuropoly/spinalcordtoolbox/blob/master/scripts/msct_moco.py#L308) but not used. As [mentioned by a user on the forum](http://forum.spinalcordmri.org/t/enabling-the-extraction-of-fmri-motion-correction-parameters/94/2?u=jcohenadad) it would be nice to re-activate this feature. Could be in the...
For data that are acquired interleaved (first pass: odd slices, second pass: even slices), slowly-varying changes in the B0 field induces discontinuities every other slice. The current slice-regularized moco algorithm...
Several users are asking for a feature to compute spinal cord volume. We could easily implement that in `sct_process_segmentation`. User posts: - http://forum.spinalcordmri.org/t/t1-contrast-brain-image-error-output/395/4 - http://forum.spinalcordmri.org/t/get-spinal-cord-volume/152
We should implement a parser verification for what users entered, depending on the method specified by `-p`. Example of confused user: http://forum.spinalcordmri.org/t/problem-with-sct-qc/431
When there is an empty slice, slice-wise motion correction crashes, as seen here: http://forum.spinalcordmri.org/t/error-when-running-sct-dmri-moco/440 It would be easy, before calling ANTs command, to check if the slice is empty. If...
Context: https://forum.spinalcordmri.org/t/error-when-running-sct-get-centerline/551/4