Julien Cohen-Adad

Results 173 issues of Julien Cohen-Adad

http://www.mritoolbox.com/MPRAGESimulator.html

New Model

Why would we do that? to gain visibility More info on BIDS App --> https://bids-apps.neuroimaging.io/

hey team! what should be the strategy for handling division by zero (or epsilon) when computing MTR (this applies to other methods too, e.g. MTsat)? - detect small divisor, mask...

Model:MTSAT
discussion needed

[this hard-coded definition](https://github.com/neuropoly/qMRLab/blob/master/Models/Magnetization_transfer/mt_sat.m#L101) is based on [this reference](https://www.frontiersin.org/articles/10.3389/fnins.2013.00095/full). What I find problematic is that there is no explanation about the origin of this number, and the article by Weiskopf et...

priority:low
discussion needed

check integration of sentry with matlab add opt in/out for users

We need to implement an efficient way of generating logs of analyses. Logs are important for debugging and for users to share exactly what the run. Ideas to borrow from...

enhancement

``osf fetch`` only works with single files. It would be great to allow the user to download a folder and its contents (recursively) as a zip file.

enhancement

When running `sct_run_batch`, user points to a dataset. The log file indicates the dataset that was used, e.g.: ~~~ sct_run_batch arguments were: batch_log: sct_run_batch_log.txt config: /home/jcohen/config.yml continue_on_error: 1 email_from: null...

enhancement
needs-discussion
sct_run_batch

The script `sct_check_dependencies` only check the presence of the folder data/, which in some cases is not sensitive enough (e.g., the folder could be there, but not the data).

sct_check_dependencies

e.g. to be able to count the number of installations