Julien Cohen-Adad
Julien Cohen-Adad
### Context A collaboration with Michael Hardisty at University of Toronto, which started ~4 years ago, led to the development of an [SCT plugin](https://bitbucket.org/OrthopaedicBiomechanicsLab/sctwrappers/src/sct_docker/) for [3D Slicer](https://www.slicer.org/). We currently already...
When validating output centerlines, it would be convenient to have a QC. One possibility is to use multiple axial views, as done for the SC segmentation QC. However, given that...
The [spine-generic](https://github.com/spine-generic/data-multi-subject) dataset is being increasingly downloaded, which comes at a cost. For example, the cost for 2023 was 478$, which is not negligible (cost per month below): ~~~ >>>...
> ⚠️ This first post is being edited to display the latest strategy/consensus from the team. A derivatives to this dataset was created for the [contrast-agnostic-sofseg](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord) project. The derived dataset...
Following on https://github.com/spine-generic/data-multi-subject/issues/36#issuecomment-688535998: Some scans (notably on Philips) might have different signal quantization between the MTon/off and the T1w scan: MT on/off: ~~~ "PhilipsRWVSlope": 1.69499, "PhilipsRWVIntercept": 0, "PhilipsRescaleSlope": 1.69499, ~~~...
[log_stats.txt](https://github.com/spine-generic/data-multi-subject/files/5283528/log_stats.txt) To fix in the next release
Getting this: ~~~ [jcohen@gra-login3 ~]$ rm -rf data-multi-subject/ rm: cannot remove 'data-multi-subject/.git/annex/objects/Mm/XM/SHA256E-s18582870--fc52f3193bbfd019e72467c15cac7a32259e52e86a251e654501143b917f5ffc.nii.gz/SHA256E-s18582870--fc52f3193bbfd019e72467c15cac7a32259e52e86a251e654501143b917f5ffc.nii.gz': Permission denied ~~~ I remember @kousu had a trick, but i forgot what it was. We should document...
Working on a branch, I wanted to update it with a recently-updated master branch. I went ahead with the traditional `git rebase master`, but encountered the following issue: Full details...
MTsat data are poorly reproducible: **From: r20200830:**  The purpose of this issue is to discuss potential causes. **sherbrooke** - MTsat=0.000110555005470231. - Data look OK - acq params: -trmt 00645023...