Jacki Buros Novik

Error with `ppc_loo_interval`: missing value where TRUE/FALSE needed

3

Getting the following error when running `ppc_loo_interval` on a model estimated using CmdStan. For context, I've read the samples into an R stanfit object, and both `y_rep` and `log_lik` were...

`spread_draws` can't find indexed variables from stanfit generated by rstan::read_stan_csv

4

First, thanks for putting together a well-thought-out package. Very useful functions here to support common workflows. I'm seeing a problem using `spread_draws` with a fit loaded from CmdStan using `rstan::read_stan_csv()`....

Include `stan_surv` in CRAN release of rstanarm?

15

#### Summary: It would be amazing if we could finally merge the `feature/survival` branch into rstanarm, per this discussion [on Apr 29](https://github.com/stan-dev/rstanarm/issues/535#issuecomment-1112899327). I'm surfacing this as a stand-alone issue to...

Graceful error handling in future_lapply

6

I've been using `future_lapply` to submit jobs to a cluster of gcloud compute nodes - which is awesome!! Thanks so much for adding this user-friendly function. One issue I'm running...

add test for from_cmdstanpy to distinguish between vectors of length 1 and scalars

10

**EDIT (@OriolAbril): See https://github.com/arviz-devs/arviz/issues/1646#issuecomment-1125464400 for an up to date description of the issue.** --- **Describe the bug** When fitting a model using cmdstanpy and reading it into an arviz.InferenceData object,...

Would be useful to have a doc explaining to users how to write their own filter functions.

Add capability to cache fitted Stan models [WIP]

1

In some cohorts we end up fitting long-running Stan models as part of the analysis process. It would be convenient to be able to cache these fitted objects (in much...

Report on but do not error when patient has no RNA data

15

Here I'm trying to achieve a goal of allowing an analysis on a cohort where some but not all records have RNA sequencing data. Currently, if one is using a...

Small fixes to improve estimation of expressed neoantigens

15

Added a variety of debug messages, also modified isovar cache so that the cached file varies according to the input variants provided. In the absence of this, I was seeing...