jean-marie burel

Change required to work with SCL Python 3.8 https://github.com/ome/omero-install/pull/260 will need to be merged and repository tag before merging this PR

Add the apps to the job. This PR adds the changes made to merge-ci. Note that it does not yet include omero-web-zarr cc @will-moore

Jenkins-ci upgrade

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**PHASE I** (Jan 2022) Current build is failing due to old version of Jenkins docker image. Main goal of this work is to have an updated working environment to test...

FlowSightReader: Tried to read past end of IFD data

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Attempting to convert cif files associated to https://www.ebi.ac.uk/biostudies/BioImages/studies/S-BIAD452?query=S-BIAD452 during ABis workshop to help one of the participants who wants to access specific IDR data and BIA data ``` Caused by:...

LIF reader Illegal argument exception

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``` stacktrace=java.lang.IllegalArgumentException at java.nio.Buffer.position(Buffer.java:244) at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:650) at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:494) at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:482) at loci.common.RandomAccessInputStream.skipBytes(RandomAccessInputStream.java:670) ``` Error using bf 6.3.1 https://www.openmicroscopy.org/qa2/qa/feedback/33438/ Close if no longer relevant

test classes included in omero-common see https://github.com/ome/omero-common/pull/42

In order to be able to upload http had to be used instead of https

Password used to upload cannot contain any symbol.

Display ROI name

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see https://github.com/ome/omero-blitz/pull/90 for background

Propagation of rois across z or t

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Discussed during the GBI training The desktop client OMERO.insight allows to propagate, but the feature is missing in the web viewer