jean-marie burel
jean-marie burel
Since we will be working on that study. We should take the opportunity to also fix the location metadata
Strategy in place in ``omero-blitz/src/main/java/omero/cmd/graphs/DuplicateI.java`` could be re-used and we can introduce a "swapFileSet"
In order to avoid the direct ``psql`` command We will need to do something like https://github.com/ome/omero-blitz/blob/master/src/main/java/omero/cmd/graphs/DuplicateI.java#L1019 via a new command e.g. ``swapFileset``
Relevant part ``` Caused by: java.lang.IllegalArgumentException: Invalid index: -1 at loci.formats.FormatReader.coreIndexToSeries(FormatReader.java:1328) at loci.formats.FormatReader.getSeriesCount(FormatReader.java:963) at loci.formats.MetadataTools.populatePixels(MetadataTools.java:137) at loci.formats.MetadataTools.populatePixels(MetadataTools.java:116) at loci.formats.in.ZarrReader.initFile(ZarrReader.java:282) ``` cc @dgault
Another example analysing screen data in cellProfiler can also be found at https://github.com/ome/omero-guide-cellprofiler/blob/master/notebooks/ We use for that example data from [idr0002](https://idr.openmicroscopy.org/webclient/?show=screen-102)
With the approach you will only stream the plane you wish to analyse. if you want to re-analyse you could also save the numpy array locally and inject them in...
Thanks. This is probably due to the fact that for some genes no results are found. I will adjust that
@pwalczysko fixed
I will sort that out
@pwalczysko fixed