Jesse Bloom
Jesse Bloom
Is there a way to get mutations at **non-coding** sites along branches the same way that `summary --translate` does it for coding sites? As far as I can tell, the...
The pre-built mutation annotated trees at http://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/UShER_SARS-CoV-2/ has a README that says to cite Lanfear (2020) and Turakhia et al (2021). But it seems like [McBroome et al (2021)](https://academic.oup.com/mbe/article/38/12/5819/6361626) is...
I get the following error when I run `papermill` with `numpy` version 2.0.0: ``` papermill.exceptions.PapermillExecutionError: --------------------------------------------------------------------------- Exception encountered at "In [1]": --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) AttributeError: _ARRAY_API...