Jonathan Bingham

Great that you're testing this! In theory Dockerflow can handle it, but I don't have a test case on it. You should be able to define the outputFile's local path...

Thanks for the feedback. We're unlikely to have it fixed for you very soon -- I'd suggest using the explicit path for now. Let me know if it doesn't work...

@Sean, did you ever get this working? Need anything from me? On Wed, Nov 2, 2016 at 2:23 PM Sean Davis [email protected] wrote: > Thanks, @jbingham https://github.com/jbingham. Sounds like a...

@Sean, any updates on this? I'm looking into adding recursive directory copy, and I could change this behavior at the same time.

PR for recursive folder copy is in now. The change to folder paths isn't yet. @seandavi FYI!

Good catch. Not sure where the limit is coming from. Can you put all of those hundreds of paths into a fofn (file of file names) and then tell it...

Are you scattering by file or using all in a single task? If the latter, your hack is probably the best solution. If I knew where the limit came from,...

Looks to be deep inside of the Dataflow code -- I have no ability to change that. *Maybe* Dockerflow could compress and decompress long text strings to stay within the...

In addition to Broad Institute's Cromwell runner for WDL, a new open source project called [Funnel](https://github.com/bmeg/funnel) builds on top of the Pipelines API to support complex workflows defined using Common...

Do you have any particular workflow engines in mind that you'd like to see adapted to support the Pipelines API? Just curious which you like best. On Tue, Aug 9,...