STUtility
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jbergenstrahle
> se ImagePlot(se, method = "raster", type = "raw") Error in magick_image_annotate(image, text, gravity, location, degrees, : R: non-conforming drawing primitive definition `text' @ error/draw.c/RenderMVGContent/4469 Following is the sessionInfo() output:...
I have a question for RunNMF for Seurat objects from Visium data which have been normalized using SCTransform. The default slot name for the function is scaled.data. SCTransform stores the...
Hi, I am trying to select spots from different sections and do differential gene expression analysis, like your example of Neighborhood analysis, how to perform such analysis within STUtility package?...
Hi Joe, I’ve trying to extract the spot coordinates from Staffli object in order to integrate single-cell RNA-seq with Spatial data. I gotta the x and y by this data.frame(GetStaffli(A1_ST)[[]][,c(1,2)]),...
Hi When I run the code below all works fine and looks ok with no borders around spots (pt.border = F), when - viewed in RStudio window - viewed in...
Hi, thanks for your great tools. I have a problem to use it, How to run TransferData from single cell RNA from seurat object( with SCT method or normal method...
Dear all, sorry for this potential trivial question. But: > RunNMF(spat, features = NULL, nfactors = 20, rescale = TRUE, reduction.name = "NMF") Error in loadNamespace(x) : there is no...
