Jon Belyeu

Results 35 comments of Jon Belyeu

Thanks for the comment and for trying this out! This issue is rooted in the version of sv-plaudit needing to be updated. I've made the newer development version of sv-plaudit...

Thanks for the assistance! This appears to be an issue we fixed in a different way a short time ago, but I forgot to update the samplot module to the...

How many bams/samples are being included? Sounds like possibly a lot?

That's odd. I haven't seen this issue before so a bit difficult to guess what's going on. Could you share your full command and samplot version?

Sorry about the delay. I'm assuming you give a start and end argument as well in your command, as this command as shown should fail to run at all. I'm...

Apologies for the slow response. SV-plaudit uses two sub-tools, [plotcritic](https://github.com/jbelyeu/PlotCritic/tree/f1b4119511067787070245eacf2c9ec8c5f4cb1e) and [samplot](https://github.com/ryanlayer/samplot). Samplot has progressed dramatically since the last SV-plaudit update, so for now I would recommend referring to the...

Can you share your samplot version? The scores are per-user and only one score will be recorded for each user. To invite additional users, send them an invitation from the...

That _is_ confusing. I don't see any mistakes in your command and I don't think you'd see that particular message if bad inputs had caused an issue (although I could...

A possible reason a variant like this one might not be phased could be if there are multiple informative sites in the region that give contradictory results, possibly because a...

Hmm, that's disappointing. It's possible there's an instability I'm not aware of. Could you try running with `-t 1`? This option requires it to run with just a single thread...