Jonathan Barnoud

After we discussed about it with @alexdb27 and @HubLot, I started to implement the k-means.

Hey ! Here is a prototype of K-means for PBxplore: https://gist.github.com/jbarnoud/fc27c5048d6e8f394598 This notebook implements the K-means algorithm and tries to visualize the clusters that are produced. I am looking for...

I updated the K-means notebook 2 days ago but I don't know if you got notified. @pierrepo @alexdb27 @HubLot

On 02/12/2018 02:05 PM, Pierre Poulain wrote: > > OK, as you wish. But the build process proposed by Bioconda is pretty > safe (everything is build upon Travis) >...

I'll do it. I got stuck at testing if the implementation is correct as I do not really have a reference to compare with. On 08-04-16 13:58, Hub wrote: >...

I got stuck at finding simulated data that were not too artificial to be relevant. I'll have a new look at this this week-end. On 08-04-16 14:27, Alexandre G. de...

I did some tests. I'll have to go back to it. On 08-04-16 14:33, Alexandre G. de Brevern wrote: > you have not simulated data ? > > — >...

On 08/04/16 15:14, Pierre Poulain wrote: > Maybe if your implementation gives similar results to what is obtained > with scikit-learn > (http://scikit-learn.org/stable/modules/generated/sklearn.cluster.KMeans.html) > it should be ok? > >...

On 27/06/16 18:56, Pierre Poulain wrote: > After discussion with @jbarnoud https://github.com/jbarnoud We > probably keep this feature for another release of PBxplore. > @jbarnoud https://github.com/jbarnoud is it possible to...

This PR (#106) implements PBkmeans. I have a branch somewhere that makes hclust work with python only. But ward is not available because of an issue in scipy. I will...