ShinyGEO

[Advaha]

Whan I am trying to access to GSE85426, I get an error message "the application unexpectedly exited". Is there something that can resolve this problem?

[gdancik]

Unfortunately, it seems that the processed data is not available in the Series Matrix File that is available on GEO.

You can see this from running the R code below:

## Load required packages ##
library(GEOquery)

## Download series data from GEO ##
GSE = "GSE85426"
data.series = getGEO(GEO = GSE, AnnotGPL = FALSE, getGPL = FALSE)
data.expr = exprs(data.series[[1]])
head(data.expr)   
nrow(data.expr)   # there are 0 rows

Without this expression data, shinyGEO cannot analyze the dataset.

However, it does look like the authors have provided processed and raw data as supplementary material (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85426), so if you are familiar with R you may be able to analyze these. Alternatively, I could potentially collaborate on this analysis if you are interested.