Jared Roach

Dan Fischer worked out a way to do this for his project. In that project, we need to construct a knowledge tree, subject to constraints. In short, we feed in...

Below is the sort of query I use in KG2: MATCH (m) WHERE m.id in [ CURIE_ID_1, CURIE_ID_2, ... CURIE_ID_n ] WITH m MATCH (n {id: "NCIT:C3137"}), p=shortestPath((n)-[*]->(m)) RETURN p...

Thanks Dan! I sent you a an invite in case you want to chime in to issue 1387 on the repo. Thanks for sending the cypher commands. Seems the constraints...

To reproduce the "BioGraph" experience, My sense is that some kind of greedy (or semi-greedy) algorithm that started at one (or both) input nodes and explored the tree until it...

For this type of query, the user is most interested in the list of all **nodes** that connect the two input nodes, not the list of all **paths**. So although...

provenance can come later, if necessary. E.g., they can ask for provenance of a particular edge between two nodes of interest. in reply to David, if the number of nodes...

Lay some superhighways through the KG. Then plot routes through it the way Google provides directions with Google maps.. This is perhaps a specific instantiation of weighted edges, but not...

The problem is not the super long name. The problem is the super long name has nothing to do with tocilizumab. It is not even an antibody.

re melphalan - nemaline myopathy https://arax.ncats.io/beta/?r=313412 only direct ARAX connection is https://arax.ncats.io/beta/?r=313412 CHEBI:28876----biolink:treats_or_applied_or_studied_to_treat----MONDO:0018958 Id: infores:automat-robokop:CHEBI:28876--biolink:treats_or_applied_or_studied_to_treat--None--None--None--MONDO:0018958--infores:text-mining-provider-targeted So if "treats_or_applied_or_studied_to_treat" is a synonym for "treats" then we actually pass this one. Maybe...

What is the specific ask and deliverable for this ticket? Is the first task to identify, enumerated, and list the unique predicates? Once we have done that, is the "investigating"...