Jan Strauss

Legend coloring issue when plotting multiple legends for different geom_point layers

3

Hi @eliocamp, Many thanks for your time and effort to develop `ggnewscale`! Unfortunately, I'm currently having some issues with the correct coloring of my legend when plotting multiple legends for...

Adding templates for visualization of ITS2 secondary structures for evolutionary comparison

23

Dear @AntonPetrov et al, I am trying to use R2DT to visualize secondary structures of non-coding internal transcribed spacer 2 (ITS2) sequences in a standard layout for evolutionary/phylogenetic analyses (e.g....

HTTP errors when parsing long taxon_id list

12

Hi there, I'm trying to create a `taxmap` from a long list of NCBI taxon IDs for subsequent filtering. I have downloaded about 17k taxa containing a specific protein domain...

No taxon_rank information when parsing from NCBI taxonomy

1

Hi there, I'm looking up taxonomic data from NCBI taxon IDs that I would like to subsequently filter using `taxon_ranks == "species"`. Unfortunately, it seems that NCBI taxon rank information...

Use phylotaR for retrieving orthologous protein sequences

1

Hi, is it possible to use `phylotaR` also for retrieving orthologous protein sequences (using all-vs.-all blastp searches) from Genbank/NCBI? Many thanks in advance for your help! Jan

Possibility to supply NCBI API key when running pipeline to access NCBI data faster?

1

Hi there, thanks for your efforts developing `phylotaR`! Unfortunately, I'm encountering issues when trying to run `phylotaR` for larger taxonomic groups (e. g. `txid=33630`). It happens during the download stage...

Repeat words to fill up shape mask?

1

Hi @lepennec, thanks again for your great support! I really appreciate it. One thing that I'm currently thinking about is how to repeat words to fill up a word cloud...

How to add text annotations to word cloud geom?

1

Hi @lepennec, many thanks again for this great package! I'd like to use `ggwordcloud` to plot a word cloud with a custom shape which I'd now like to annotate with...

add support to access PO.DAAC OPeNDAP datasets?

1

Hi @ptaconet, As I've already mentioned at https://github.com/ptaconet/opendapr/issues/4#issue-843377282, I would like to use `opendapr` to (spatiotemporal) subset and access [PO.DAAC](https://podaac.jpl.nasa.gov/) OPeNDAP [datasets](https://opendap.jpl.nasa.gov/opendap/). Do you still plan to provide access to...

opendapr fails to build manual and vignettes

1

Hi @ptaconet, I am looking for an efficient tool to access (subset and download) [PO.DAAC](https://podaac.jpl.nasa.gov/) OPeNDAP [datasets](https://opendap.jpl.nasa.gov/opendap/) and thus found `opendapr`. Is it still maintained and developed? Trying to build...