Jan Gleixner

It seems that the genotype assignment method used in GenotypeGVCFs is hard-coded to (mostly) `PREFER_PLS` : https://github.com/broadinstitute/gatk/blob/423d106612074aa3480b67b321dc66426b1c600a/src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFsEngine.java#L377 and the `--genotype-assignment-method` thus has no effect: for example (same data as in...

[BUG] merging cells sometimes freeezes cellpose/system

6

In cellpose v2.2.2 and current main, under windows, w/o CUDA, trying to merge objects with (alt+click & alt+click) leads to memory spike of varying size (0 to > 20 GB)....

[FR] Implement `logLik.glmGamPoi`

2

For many model classes in R an implementation of the `logLik` generic is provided. I often use this on holdout data (this usually requires manipulating the fitted object) to compare...

added inverse search for windows

3

- added inverseSync setting switch - added inverse_sync paramter to _jumpXXX definitions - implemented inverseSync for sumatra viewer (windows only)

use windows event/error log to log output

fixes #8

When all observations (k) are 0, ebbr fails with an unhelpful error message: ```R > ebbr::add_ebb_estimate(data.frame(k=rep(0, 10), n=sample(100, 10)), k ,n) Error in if (!all(lower ebbr::add_ebb_estimate(data.frame(k=c(1, rep(0, 9)), n=sample(100, 10)),...