PyVCF
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jamescasbon
A Variant Call Format reader for Python.
Hi I have a code which is being called by another main code when I try to run it gives the error, following are the details def createDatabaseFiles(vcfFile, varFile, annFile,...
I'd really like a way to add and edit format fields to the sample call data when writing a VCF file. Specifically, what I'm looking to do is add the...
Summary ======= This commit fixes deprecation warnings that arise from using backslashes in strings, but *not* as part of an escape sequence. It will help this library be used with...
It installed successfully: pip3 install PyVCF Then we import vcf module in python (removing and reinstalling did not solve the problem): python3 Python 3.7.7 (default, Mar 13 2020, 21:39:43) [GCC...
PYVCF3 is available here : https://pypi.org/project/PyVCF3/ As the project is not maintained anymore, but very used... I suggest to make a fork and rename the project as "PyVCF2" on pypi....
Background: In FILTER, multiple filters should be separated by semicolons. The widely used, but not actively maintained, VarScan2 genomic variant caller uses commas instead. Moreover, VarScan2 does not add ##FILTER...
setuptools now (>= v58.0.4) crashes when `use_2to3` is present in setup.py
Hi everyone, I just installed PyVCF today and after tried to run `import vcf` what I see in my terminal is this: ``` Traceback (most recent call last): File "",...
when i run command as : $ pip3 install PyVCF==0.6.8 Collecting PyVCF==0.6.8 Using cached PyVCF-0.6.8.tar.gz (34 kB) Preparing metadata (setup.py) ... error ERROR: Command errored out with exit status 1:...
