Jag (P K Jagannathan)

Fix 9594 api endpoints redirect

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Fix #9594 - Add new end points with - instead of _ in URL - Add redirect for old endpoints with _

Update swagger.config and Replace _ with - in all generic assay API endpoints and its usages

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Update swagger.config to include GENE_PANEL_DATA in public APIs Replace _ with - in all generic assay API endpoints and its usages Related to #9433 Additional end points where underscore has...

cbioportal DB migration to MySql 8

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Due to end of support for MySql 5 on Oct 2023, cbioportal DB has to migrate to MySql 8 Issues MySql 8 restricts allowPublicKeyRetrieval. - [ ] To bypass this...

Fix 9461 mutations api endpoint

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Fix #9461 - remove properites fisValue, functionalImpactScore, linkMsa, linkPdb, linkXvar, refseqMrnaId from Mutations end point - modified java files to remove unused properties and changes to tests - db changes,...

Fix cBioPortal/cbioportal#9594 Update API endpoints of Generic Assay Meta and Data due to change of _ to - in the URL endpoint.

Fix 9779 mutations api endpoint oncotator fields

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Fix #9779 - Removing ONCOTATOR_DBSNP_RS and ONCOTATOR_UNIPROT_ENTRY_NAME from mutation_event table - Backend code changes for removal of above fields

Remove dbSnp* and Oncotator* related fields in frontend and backend

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Remove OncotatorProteinPosStar, OncotatorProteinPosEnd, getOncotatorRefseqMrnaId fields in frontend and backend The changes require both frontend and backend changes. Frontend can be release ahead of backend or both releases have to happen...

fix #9461 - mutations api endpoint link fields

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- modified java files to remove unused properties and changes to tests - db changes, mutationmapper.xml - Update seed_mini.sql Fix #9461 (see https://help.github.com/en/articles/closing-issues-using-keywords)

move treatments endpoint to internal API

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Move Treatments Endpoint to Internal API - fix cBioPortal/icebox#561

add search filter criteria for authorized and unauthorized studies

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Fix cBioPortal/icebox#468 add search filter criteria for authorized and unauthorized studies ## Checks - [ ] Has tests or has a separate issue that describes the types of test that...