Jag (P K Jagannathan)

Additional end points where underscore has to be changed to hyphen (dash). "/virtual_study" "/virtual_study/save" "/custom_data/fetch" "/custom_gene_list/save" "/custom_gene_list" Frontend and backend changes have to happen together. These endpoints are dependent on...

The redirect works including POST. CircleCI does not accept redirects while testing. Changes to the frontend are in progress.

oncotatorProteinPosStart and oncotatorProteinPosEnd are used for sorting in MutationSortBy Enum

core/src/main/java/org/mskcc/cbio/portal/util/ExtendedMutationUtil.java uses getOncotatorVariantClassification. Therefore not removing getOncotatorVariantClassification.

New issue to remove oncotator and dbSnp related fields #9779

https://github.com/cBioPortal/cbioportal/issues/4345 Related issue

This PR has been superseded by the new PR https://github.com/cBioPortal/cbioportal/pull/9817/. Another PR will be created for oncotator* and dbSnp* fields

the source code is available in github. https://github.com/cBioPortal

this issue is related to #9461

ONCOTATOR_DBSNP_RS and ONCOTATOR_UNIPROT_ENTRY_NAME are always null in the cbioportal.org database.