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To do

Open jackbibby1 opened this issue 3 years ago • 5 comments

  • [x] Improve description of functions in ?
  • [x] Add heat map visualisation
  • [x] Add web page for visualisations
  • [x] Add function to deal with SingleCellExperiment objects
  • [x] Optimize memory usage in generating pathway matrices at in #17
  • [x] Allow assay specification in seurat_extract() and compare_seurat() as in #28
  • [x] Parallel implementation of compare_pathways() - done by @jiwen90
  • [x] Add functionality for multiple .gmt files #38
  • [x] Improve gene set webpage for mouse and .gmt gene sets
  • [x] Include gmt filename for pathways in compare_pathways() output -- sidelined
  • [x] Seurat v5 comparability from #67
  • [ ] Incorporate archived CRAN packages

jackbibby1 avatar Feb 23 '22 20:02 jackbibby1