SCPA
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To do
- [x] Improve description of functions in ?
- [x] Add heat map visualisation
- [x] Add web page for visualisations
- [x] Add function to deal with SingleCellExperiment objects
- [x] Optimize memory usage in generating pathway matrices at in #17
- [x] Allow assay specification in
seurat_extract()
andcompare_seurat()
as in #28 - [x] Parallel implementation of compare_pathways() - done by @jiwen90
- [x] Add functionality for multiple .gmt files #38
- [x] Improve gene set webpage for mouse and .gmt gene sets
- [x] Include gmt filename for pathways in
compare_pathways()
output -- sidelined - [x] Seurat v5 comparability from #67
- [ ] Incorporate archived CRAN packages