RaptorX-3DModeling
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j3xugit
Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.
Hi, I was just wondering if there are any updates regarding the release of the software version for python3 and tensorflow? Best regards
Hi, RaptorX is a great tool. But RaptorX-3DModeling can only predict protein structure. May I ask when you will release an all-in-one standalone version to predict ligand binding site and...
Hi RaptorX team, Thank you for providing such a great tool. I have a naive question but have not found an answer after walking through the website. I wonder what...
ERROR: invalid or damaged sequence database to be searched by hhblits: /home/rpearson/Structure_Prediction_Tools/RaptorX-3DModeling/UniRef30_2020_03_hhsuite ERROR: failed to run /home/rpearson/Structure_Prediction_Tools/RaptorX-3DModeling/BuildFeatures/BuildMSAs.sh -d ./ -m 8 ./rcsb_pdb_3NV8.fasta ERROR: failed to run /home/rpearson/Structure_Prediction_Tools/RaptorX-3DModeling/BuildFeatures//BuildFeatures.sh -o ./ -g...
Hi! I am confused about how your [code](https://github.com/j3xugit/RaptorX-3DModeling/blob/bf175f72bdfd75cbb15676475f3eef2a112084d4/BuildFeatures/Helpers/CalcMeff.py) calculates Meff in the [a3m format](https://yanglab.nankai.edu.cn/trRosetta/msa_format.html#a3m) when 'gaps aligned to inserts' are omitted. Specifically, it appears that the code treats matches (uppercase...
