Leonardo Moreno

Getting an error using NA12878 1000 genomes vcf file. Tool works using the example file provided data/Miller.vcf but throws error otherwise. Any suggestions? ftp:/­/­ftp.­1000genomes.­ebi.­ac.­uk/­vol1/­ftp/­data_collections/­1000_genomes_project/­release/­20190312_biallelic_SNV_and_INDEL/­ALL.­chr20.­shapeit2_integrated_snvindels_v2a_27022019.­GRCh38.­phased.­vcf.­gz ``` --------------------------------------------------------------- Inferences --------------------------------------------------------------- Inferring ancestors......

Null Pointer on Kourami call

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I am getting a Null Pointer error while running Kourami on a custom built IMGT HLA alignments version 3.37.0 and using 1000 genomes NA12878 GRCh38 aligned bam file. I went...

Hi, I am having trouble creating a background using gnomAD v3. https://storage.googleapis.com/gnomad-public/release/3.0/vcf/genomes/gnomad.genomes.r3.0.sites.vcf.bgz Command ran: `build_background -i gnomad.genomes.r3.0.sites.vcf.bgz -b 1 -v CSQ,4,6,1,15 -o test.out ` I receive the error: ``` #chr...