Jared Andrews comments

Results 21 comments of


Jared Andrews

login failure

I asked Ken about this before I published it, and he basically said as long as people didn't abuse it, he was totally cool with it. I can't imagine once...

test_get_program_ratings failing (shape test)

Pegging the test is the right move. And I should get CI set up with Github Actions too, probably.

test_get_program_ratings failing (shape test)

Do you have any interest in being added as a collaborator to this repo? I really don't have the time to chase down bugs and fix the edge cases each...

Add login failure detection

Missed this, thanks for the PR. I'll take try to test soon.

Feature Request: new option -i and -I to complement -e and -E

A parameter to provide genome length directly would also be very helpful. We subset data frequently to run multiple different peak callers with various parameters to find the best settings...

visualizeSegments plots chromosome label at chromosome midpoint rather than centromere

Oh, nice. Gotta say I didn't expect a response/update so quick, so I did roll my own (quite messy) version as well if it's of any interest: ```r #' Visualize...

visualizeSegments plots chromosome label at chromosome midpoint rather than centromere

I don't mind at all if any of the elements are incorporated, feel free to rip whatever's useful. plotly could be an optional parameter, have to set `interactive = TRUE`...

Reference Allele Error on dbSNP on step HaplotypeCaller CNN1

This is still a problem in 3.4.0.

Consider using `anno_mark` when `complex=TRUE` and `highlight.features` used in dittoHeatmap

I don't believe this has been implemented, but you can do it manually: ``` library(dittoSeq) example(importDittoBulk, echo = FALSE) scRNA

Consider using `anno_mark` when `complex=TRUE` and `highlight.features` used in dittoHeatmap

I looked at the internals for this when I originally opened the issue, and I don't think it was too tough an addition, but it required more effort/time than I...