installation issues

[hkaspersen]

Hello, and thank you for creating this tool! I was going to test it out, but got into some issues with installation. The install.sh script failed due to cmake not being in my path. It would be great if that was mentioned in the documentation!

Also, I got this error after ensuring cmake is available:

Created the ./build/LIBS_release directory
../../build/Makefile.tbb:28: CONFIG: cfg=release arch=intel64 compiler=gcc target=linux runtime=cc4.8.5_libc2.17_kernel3.10.0
g++: error: unrecognized command line option ‘-std=c++14’
make[4]: *** [concurrent_hash_map.o] Error 1
make[3]: *** [tbb] Error 2
make[2]: *** [libtbb-prefix/src/libtbb-stamp/libtbb-build] Error 2
make[1]: *** [CMakeFiles/libtbb.dir/all] Error 2
make: *** [all] Error 2

Any idea what is causing this?

Thanks in advance!

[gskoufos]

Hi Håkon,

Thanks for your interest in our work!

We are in the process of updating the documentation and we'll add a more detailed list of dependencies.

Regarding your installation issue, it seems like you're using a GCC version without support for C++14; some of the methods that AGAMEMNON is using internally (e.g., Pufferfish) need C++14 support.

Could you please try to update your current GCC version (or install a second GCC and switch to the latest one) to one with C++14 support? Then start the installation process from the beginning and this will probably fix your issue!

Maybe this link will help you: https://scholtyssek.org/en/gcc-mit-c14-unterstuetzung-fuer-ubuntu-mint-installieren/

Let me know if you managed to solve your issue or need additional help!

Best, Giorgos

[Sonal-jumpcode]

Hi, I was trying to run the shiny app, but gives me error Error in setwd: cannot change working directory I figured this error comes from import.R where in the first line path is set to "results" folder. There is no such "results" folder. Can you please update the tutorial. I would very much like to run the Shiny App.

Thanks Sonal