Quality log

[colindaven]

Hi,

maybe it would be possible to list the number of corrected bases per contig in an output log. This would be helpful for those with large genomes from novel strains/genotypes who do not have a perfect reference sequence to compare to.

Maybe something like contig_name contig_length reads_aligned coverage bases_improved

For example, I ran racon once, then realigned using minimap and ran racon again. I have been using mummers dnadiff to check for differences between the two contigs but interpreting output for a lot of contigs is also quite involved.

Thanks for a nice and fast tool, Colin

[isovic]

Hi Colin, this is a good suggestion, I marked it as an Enhancement and we'll try to add something along those lines in the next update. I can see the potential usefulness of such info. Thank you and best regards, Ivan.

[HeQSun]

Hi,

I have the same question. Is there a report (by any option of racon) on which sites the contigs are polished?

thanks, Hequan

[rvaser]

Hi Hequan, unfortunately no.

Best regards, Robert