graphmap icon indicating copy to clipboard operation
graphmap copied to clipboard

Error with graphmap installation

Open herrroaa opened this issue 6 years ago • 2 comments

Hi , I followed the instruction for graphmap installation, but I received an error (see below)

$ make Makefile:100: "*** WARNING g++ minor version <7 ***" mkdir -p obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/ g++ -static-libgcc -static-libstdc++ -D__cplusplus=201103L -I"./src/" -I"/usr/include/" -I"codebase/seqlib/src/libs/seqan-library-2.0.1/include" -I"codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/" -Icodebase/argumentparser/src -Icodebase/gindex/src -Icodebase/seqlib/src -DRELEASE_VERSION -O3 -fdata-sections -ffunction-sections -c -fmessage-length=0 -ffreestanding -fopenmp -m64 -std=c++11 -Werror=return-type -pthread -o obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.o codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.cpp clang: error: unsupported option '-fopenmp' make: *** [obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.o] Error 1

herrroaa avatar Jul 17 '18 00:07 herrroaa

Have you tried installation from (bio)conda?

wdecoster avatar Jul 17 '18 08:07 wdecoster

It worked when I used bioconda.

Thanks

herrroaa avatar Jul 17 '18 15:07 herrroaa