Ines Scheller

The step that would require internet connection in the counting script is the obtaining the list of standard chromosomes to which we subset when using the default parameters. So if...

Hi @chrisodhams , as @vyepez88 suggested, when running DROP with `keepNonStandardChrs: true` , you should not run into this issue in the first place. For the error you got, the...

Hi @jjyotikataria, did you already have a look at the explanations of these metrics in our [vignette](http://www.bioconductor.org/packages/release/bioc/vignettes/FRASER/inst/doc/FRASER.pdf) and in our [preprint ](https://www.biorxiv.org/content/10.1101/2019.12.18.866830v1) on bioRxiv?

I still not really sure what part you did not understand regarding the p values and z scores, so I will give a brief basic explanation and hope that it...

Dear @bw2 , thank you for your feedback. 1. Regarding your first question, it is expected to find a smaller latent space dimension in FRASER compared to OUTRIDER, as the...

Hi @jakobjn , thanks for reporting this! I will look into this and come back to you. Can you add which FRASER / R / Bionconductor version you are using...

Not relevant anymore