Sam Isaacson
Sam Isaacson
Since tests are now passing and I am not that familiar with the code, I haven't updated any spatial related codes to remove scalarization of parameters in https://github.com/SciML/Catalyst.jl/pull/1052. This should...
```julia ┌ Warning: Initialization system is overdetermined. 1 equations for 0 unknowns. Initialization will default to using least squares. To suppress this warning pass warn_initialize_determined = false. To make this...
We should drop our test dependencies on OrdinaryDiffEq and switch to the slimmer packages for solvers we actually use there (mainly Tsit5 I think). This should help reduce build times...
See failures and comments in https://github.com/SciML/Catalyst.jl/pull/1048
It seems like some users, especially anyone with a longer model, may prefer to have the DSL require all species, parameters, and variables to be pre-declared (to help with catching...
SI units works, i.e. ```julia @test_nowarn @reaction_network begin @ivs t [unit=u"s"] @species begin X1(t), [unit=u"mol/m^3"] Z1(t), [unit=u"mol/m^3"] X2(t), [unit=u"mol/m^3"] Z2(t), [unit=u"mol/m^3"] X3(t), [unit=u"mol/m^3"] Y3(t), [unit=u"mol/m^3"] Z3(t), [unit=u"mol/m^3"] end @parameters begin...
Per discussions @ChrisRackauckas and I had around https://github.com/SciML/JumpProcesses.jl/issues/442 it would be nice to be able to have users tell us we can alias their `tstops` vector in JumpProcesses so we...
```julia using ModelingToolkit using StructuralIdentifiability const SI = StructuralIdentifiability function testSI() t = ModelingToolkit.t_nounits D = ModelingToolkit.D_nounits @variables X(t) @parameters p d eqs = [ D(X) ~ p - d*X...
And for other spatial SSAs.
There seems to be an issue with format checks from JuliaFormatter not just causing large reformattings suddenly, but also now leading to bugs in the formatted code: https://github.com/domluna/JuliaFormatter.jl/issues/878 Once this...