Sam Isaacson
Sam Isaacson
In fact, we can have `CatalystBifurcationKit` reexport Catalyst, so a user would only need to say ```julia using CatalystBifuractionKit ```
Also, keep in mind we can setup downstream tests, which we should probably be doing anyways for certain other packages, to check with each PR if the extension library breaks....
Making a release with all the extensions broken seems like a bad idea when they are coupled into Catalyst like this. (Hence why decoupling them would be nice, then they...
And yes, I mean that we can test each extension library as a downstream test, like MTK does for Catalyst, as part of an additional CI script. When it fails...
Keep in mind we don't need separate repos for them. They can all live in sub-folders of a lib folder in Catalyst. So it would all still be in one...
@PBrdng as @TorkelE said this isn’t meant to be a HC criticism. It is a great package and works very nicely with Catalyst. I also very much appreciated your quick...
Just to return to this issue; the SI extension is now causing us to be completely unable to even run tests: https://github.com/SciML/Catalyst.jl/actions/runs/11239742228/job/31248152175?pr=1053#step:6:1197 So we are completely broken currently due to...
I'm going to remove it completely on master until this Julia crashing issue gets fixed in SI as otherwise we can't even run CI (right now it was removed from...
Do you have any material / thoughts on how compartments should be included? What changes should `ReactionSystem`s have, are compartments just metadata associated with a species and.or reaction, or do...
Here are some natural questions/complexities that compartments then introduce: - Should reactions also be tied to compartments too, or just be possible in any compartment that contains the needed substrate...