Sam Isaacson

Results 506 comments of Sam Isaacson

@Vilin97 I was thinking about non-local reactions. What do you think about formalizing our "update" API, and then making it available to users via affect functions. The idea being that...

But the constant rate PR doesn't allow users to register where they are making updates right? It assumes they are made at a specific node only I thought? I was...

Sounds good. I'm working on Torkel's spatial PR again finally, hopefully we will merge it soon even it is not really in a good final form, and then I will...

@CedricLhoussaine just returning to this now. Out of curiosity, do you actually need to replace the parameter with a concrete value, or just want to change the default value of...

We need to provide the location or there would be no way to have a rate that is spatially varying. For example, zero at some sites and non zero at...

What conversion should we use? On quick glance it looks like the type of `dt` is used in DiffEqBase, but there is no `dt` here.

Let me think about the interface here a bit. This may be the easiest way to go, but I wonder if it would be better to have some kind of...

This requires some thought since I think frequently one won't want to evaluate the rate simultaneous to the rate bounds for performance reasons, so we'd also want to support versions...

I think the immutable problem assumption docs were added long after `JumpProblem`, so it looks like it was forgotten that it does not hold here when those docs were written....

In the call to `init` you can also set `alias_jump = false`, see https://github.com/SciML/JumpProcesses.jl/blob/eeede564e52c1ae7d43e1042754d8c1f84f04e60/src/SSA_stepper.jl#L136 I don't like that we have different behavior in the multithreaded (where we also deepcopy) and...