Sam Isaacson

I was traveling today, but will take a look tomorrow. Looks cool!

So one thing we need to be consider with having new system types is that it means we'll have to reimplement any compositional modeling type functionality (subsystems, flatten, extend, compose,...

Yeah, specifying rate expressions is tricky. One really wants a stencil type language to specify them, which I think is available in Symbolics but not really been advertised. In JumpProcesses...

(above `i` and `j` denote destination and source vertices)

Seems to be working now. pdes.md shows how one can currently create and solve a PDE system from a `ReactionSystem` (without adding spatial transport info into the `ReactionSystem` to enable...

Well, the continuous space generalization for a bimolecular reaction is two molecules react with a probability per time based on their spatial positions. One of my longer-term goals is to...

If tests pass this should be good to go, and is the minimum perturbation to a `ReactionSystem` that supports symbolically building PDE models. Next we could consider something like @TorkelE...

@ChrisRackauckas did you want to take a look? Otherwise I’ll merge. Thanks

Yeah, something like this should work for a basic system of reactions. The problem becomes more complicated if one wants to handle coupled sub-systems or constraint systems too. Then it...

I'm swamped till the end of the month, but hope to get to it in early October.