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load_gff_list() does not like special characters in names

Open LuzanelL opened this issue 2 years ago • 1 comments

I was processing a few genome datasets, which included some spaces in the naming of files. Now, I know unix based systems does not generally like spaces and/or special characters in files, and maybe it is dir() fault in not backslashing spaces ad others special characters, just thought to share what happenes with me.

load_gff_list(): gffs <- load_gff_list(gff_files) sh: 1: Syntax error: "(" unexpected and then it tries to find the files anyway, and errors again: Error in { : task 1 failed - "Cannot find /tmp/Rtmp33fvXM/gffTMP50ee4cbcabd9.fasta, please correct path and/or file name"

Anyways, cheers

LuzanelL avatar Nov 21 '22 16:11 LuzanelL