load_gff_list() error

[kazumaxneo]

Hi,

I am interested in PATO's dn_ds() functin and installed PATO in my R 4.1.1 enviroment (os: ubuntu18). But, I got the following error when using load_gff_list() to to load my GFF lists.

library(pato) gff_files <- dir("./GFF_dir", pattern = ".gff", full.names = T) gffs <- load_gff_list(gff_files)

#error message Error in socketAccept(socket = socket, blocking = TRUE, open = "a+b", : all connections are in use

My GFF files were created using prokka. I do not think there is a problem with the format of the my GFF files since it can be used by other pan-genomic analysis tools (e.g. roary).