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import error after install

Open Ethnobotaniker opened this issue 5 months ago • 3 comments

Hello, i just installed keggcharter in a clean conda enviroment and cant run it. The enviroment i installed it in is active and when i try to run it with " keggcharter -h" i get the following output:

`` /home/lfuernwein/.conda/envs/keggcharter/bin/keggcharter:9: DeprecationWarning: Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0), (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries) but was not found to be installed on your system. If this would cause problems for you, please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466

import pandas as pd Traceback (most recent call last): File "/home/lfuernwein/.conda/envs/keggcharter/bin/keggcharter", line 23, in from keggpathway_map import KEGGPathwayMap, expand_by_list_column File "/home/lfuernwein/.conda/envs/keggcharter/share/keggpathway_map.py", line 9, in from matplotlib import pyplot as plt, colors, colormaps ImportError: cannot import name 'colormaps' from 'matplotlib' (/home/lfuernwein/.conda/envs/keggcharter/lib/python3.10/site-packages/matplotlib/init.py) ``

I installed it as follows: conda create -n keggcharter conda activate keggcharter conda install -c conda-forge -c bioconda keggcharter i would appreciate your help and thank you in advance.

Ethnobotaniker avatar Feb 01 '24 12:02 Ethnobotaniker