Improve mem height/width estimation in run_indep_workflow...

[iqbal-lab]

..as Rachel says it consistently underestimates mem required.

[Phelimb]

For this do you just need a kmer count? Have looked at hyperloglog recently

• could be useful here. Rapid counting of unique kmer in low memory.

On Thu, 10 Sep 2015 14:19 Zamin Iqbal [email protected] wrote:

..as Rachel says it consistently underestimates mem required.

— Reply to this email directly or view it on GitHub https://github.com/iqbal-lab/cortex/issues/5.

[iqbal-lab]

Er.. yes

[Phelimb]

Very simple script here:

https://github.com/Phelimb/hllcounter

let me know if useful

[iqbal-lab]

Will do!