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Published 20 hours ago • verified publisher icon iprada

about samtools index for bam

Open 10KGenomics opened this issue 4 years ago • 4 comments

When I used samtools index to index the bam file, I found that an error would be reported. The species is Ginkgo biloba and the chromosome length is longer than that of humans. It cannot be constructed. And I use the -c parameter to form a csi file, and I want to further use the eccDNA identification software Circle- Map software cannot analyze further and report errors. There is a solution.

The csi file cannot be used for the next step of Circle-Map eccDNA recognition

10KGenomics avatar Oct 28 '20 02:10 10KGenomics

Uploading picture-1.PNG…

10KGenomics avatar Oct 28 '20 02:10 10KGenomics

Hi @caijingtao1993,

Could you send me the error log by email?

Best,

Inigo

PS: Gingko biloba is a very interesting tree. I hope you get some very nice results!

iprada avatar Oct 28 '20 09:10 iprada

Dear Author:   Hello, see the attachment for the log file. Looking forward to your reply.

10KGenomics avatar Nov 03 '20 05:11 10KGenomics

I do not see any attachement. Could you send it directly to my mail?

iprada avatar Nov 03 '20 08:11 iprada