deps: remove dependency on ipfs and node-pre-gyp

[SgtPooki]

Our node-test CI tests have been failing for a while. I saw that they're failing when trying to install node-pre-gyp: https://github.com/ipfs/ipfs-webui/actions/runs/7067879133/job/19241785717

running npm why node-pre-gyp resulted in a chain only showing ipfs as the dependency we used that pulled it in. Checking where ipfs was still used showed that it was only used to import a type of Pin.